Transcript: ENST00000392927.3 SYCP3-001

Description

synaptonemal complex protein 3 [Source:HGNC Symbol;Acc:18130]

Gene Synonyms

COR1, SCP3, SPGF4

Location

About this transcript

This transcript has 9 exons, is annotated with 5 domains and features, is associated with 4757 variant alleles and maps to 299 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000392927.3	SYCP3-001	1120	236aa	ENSP00000376658.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9087	Q8IZU3	NM_153694.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000266743.2	SYCP3-002	1068	236aa	ENSP00000266743.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9087	Q8IZU3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000392924.1	SYCP3-003	845	236aa	ENSP00000376655.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9087	Q8IZU3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000478139.1	SYCP3-004	3690	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000478238.1	SYCP3-005	665	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 8, Transcript length: 1,120 bps, Translation length: 236 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8IZU3

CCDS

This transcript is a member of the Human CCDS set: CCDS9087

Version

ENST00000392927.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000316478 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.