Transcript: ENST00000552240.1 PRICKLE1-004

Description

prickle homolog 1 (Drosophila) [Source:HGNC Symbol;Acc:17019]

Gene Synonyms

EPM1B, FLJ31937, RILP

Location

Chromosome 12: 42,853,070-42,877,416 reverse strand.

About this transcript

This transcript has 8 exons, is annotated with 26 domains and features, is associated with 10640 variant alleles and maps to 429 oligo probes.

Gene

This transcript is a product of gene ENSG00000139174.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000455697.1	PRICKLE1-201	4253	831aa	ENSP00000401060.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8742	F8VUG8 F8W1J1 F8W1Q8 Q687H3 Q687H4 Q96MT3	NM_001144883.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000445766.2	PRICKLE1-005	4080	831aa	ENSP00000398947.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8742	F8VUG8 F8W1J1 F8W1Q8 Q687H3 Q687H4 Q96MT3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000548696.1	PRICKLE1-003	3584	831aa	ENSP00000448359.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8742	F8VUG8 F8W1J1 F8W1Q8 Q687H3 Q687H4 Q96MT3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000552240.1	PRICKLE1-004	3324	831aa	ENSP00000449819.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8742	F8VUG8 F8W1J1 F8W1Q8 Q687H3 Q687H4 Q96MT3	NM_001144881.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000345127.3	PRICKLE1-001	3315	831aa	ENSP00000345064.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8742	F8VUG8 F8W1J1 F8W1Q8 Q687H3 Q687H4 Q96MT3	NM_153026.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000551050.1	PRICKLE1-007	693	119aa	ENSP00000446970.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8W1J1 F8W1Q8 Q687H3 Q687H4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000552108.1	PRICKLE1-006	585	159aa	ENSP00000447870.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VUG8 F8W1J1 F8W1Q8 Q687H3 Q687H4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000547113.1	PRICKLE1-002	456	109aa	ENSP00000446699.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8W1Q8 Q687H3 Q687H4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000552200.1	PRICKLE1-008	453	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 8, Coding exons: 7, Transcript length: 3,324 bps, Translation length: 831 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q96MT3

CCDS

This transcript is a member of the Human CCDS set: CCDS8742

Version

ENST00000552240.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000404069 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000552240.1 PRICKLE1-004

Summary