Transcript: ENST00000452464.2 SCARB2-002

Description

scavenger receptor class B, member 2 [Source:HGNC Symbol;Acc:1665]

Gene Synonyms

AMRF, CD36L2, EPM4, HLGP85, LGP85, LIMP-2, LIMP2, LIMPII, SR-BII

Location

About this transcript

This transcript has 9 exons, is annotated with 13 domains and features, is associated with 20929 variant alleles and maps to 357 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000264896.2	SCARB2-001	4763	478aa	ENSP00000264896.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3577	Q14108	NM_005506.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000452464.2	SCARB2-002	1495	335aa	ENSP00000399154.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS56335	Q14108	NM_001204255.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000509994.1	SCARB2-003	544	106aa	ENSP00000420988.1	Nonsense mediated decay		D6RDG0	-	-
ENST00000511129.1	SCARB2-005	790	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000502908.1	SCARB2-004	506	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 1,495 bps, Translation length: 335 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q14108

CCDS

This transcript is a member of the Human CCDS set: CCDS56335

Version

ENST00000452464.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000362702 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.