Transcript: ENST00000511129.1 SCARB2-005

Description

scavenger receptor class B, member 2 [Source:HGNC Symbol;Acc:1665]

Gene Synonyms

AMRF, CD36L2, EPM4, HLGP85, LGP85, LIMP-2, LIMP2, LIMPII, SR-BII

Location

About this transcript

This transcript has 2 exons, is associated with 1443 variant alleles and maps to 71 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000264896.2	SCARB2-001	4763	478aa	ENSP00000264896.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3577	Q14108	NM_005506.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000452464.2	SCARB2-002	1495	335aa	ENSP00000399154.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS56335	Q14108	NM_001204255.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000509994.1	SCARB2-003	544	106aa	ENSP00000420988.1	Nonsense mediated decay		D6RDG0	-	-
ENST00000511129.1	SCARB2-005	790	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000502908.1	SCARB2-004	506	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 790 bps,

Version

ENST00000511129.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000362705 (version 1)