Transcript: ENST00000261024.2 SLC40A1-001

Description

solute carrier family 40 (iron-regulated transporter), member 1 [Source:HGNC Symbol;Acc:10909]

Gene Synonyms

FPN1, HFE4, IREG1, MST079, MTP1, SLC11A3

Location

Chromosome 2: 190,425,305-190,445,613 reverse strand.

About this transcript

This transcript has 8 exons, is annotated with 21 domains and features, is associated with 8556 variant alleles and maps to 549 oligo probes.

Gene

This transcript is a product of gene ENSG00000138449.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000261024.2	SLC40A1-001	3442	571aa	ENSP00000261024.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2299	E7EQF8 E7ES28 Q4PNE6 Q9NP59	NM_014585.5	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000427241.1	SLC40A1-002	824	200aa	ENSP00000390005.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7EQF8 E7ES28 Q4PNE6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000455320.1	SLC40A1-004	592	55aa	ENSP00000413549.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7EQF8 Q4PNE6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000427419.1	SLC40A1-003	299	25aa	ENSP00000392730.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q4PNE2 Q4PNE3 Q4PNE4 Q4PNE6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000440626.1	SLC40A1-005	209	25aa	ENSP00000396134.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q4PNE2 Q4PNE3 Q4PNE4 Q4PNE6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000418714.1	SLC40A1-008	712	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000479598.1	SLC40A1-006	993	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 8, Coding exons: 8, Transcript length: 3,442 bps, Translation length: 571 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9NP59

CCDS

This transcript is a member of the Human CCDS set: CCDS2299

Version

ENST00000261024.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000255916 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000261024.2 SLC40A1-001

Summary