Transcript: ENST00000395833.3 LMO2-002

Description

LIM domain only 2 (rhombotin-like 1) [Source:HGNC Symbol;Acc:6642]

Gene Synonyms

RBTN2, RBTNL1, RHOM2, TTG2

Location

About this transcript

This transcript has 3 exons, is annotated with 13 domains and features, is associated with 4949 variant alleles and maps to 383 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000257818.2	LMO2-001	2294	227aa	ENSP00000257818.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7888	P25791	NM_005574.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000395833.3	LMO2-002	1687	158aa	ENSP00000379175.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44567	P25791	NM_001142316.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000411482.1	LMO2-003	1519	55aa	ENSP00000401967.1	Nonsense mediated decay		P25791	-	-
ENST00000493667.1	LMO2-005	390	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000464025.1	LMO2-004	1550	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000465614.1	LMO2-006	869	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 1,687 bps, Translation length: 158 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P25791

CCDS

This transcript is a member of the Human CCDS set: CCDS44567

Version

ENST00000395833.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000347777 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.