Transcript: ENST00000393212.3 LRRIQ1-007

Description

leucine-rich repeats and IQ motif containing 1 [Source:HGNC Symbol;Acc:25708]

Gene Synonyms

FLJ12303, KIAA1801, RP11-193M21.1

Location

Chromosome 12: 85,430,129-85,441,064 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 2 domains and features, is associated with 4605 variant alleles and maps to 181 oligo probes.

Gene

This transcript is a product of gene ENSG00000133640.14 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000393217.2	LRRIQ1-004	5394	1722aa	ENSP00000376910.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41816	A8MY60 Q96JM4	NM_001079910.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000526363.1	LRRIQ1-006	559	107aa	ENSP00000431756.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000393212.3	LRRIQ1-007	555	164aa	ENSP00000376906.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A8MY60	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000533414.1	LRRIQ1-003	432	144aa	ENSP00000436898.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000528777.3	LRRIQ1-005	786	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000525971.2	LRRIQ1-001	4464	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000529408.1	LRRIQ1-002	1890	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 5, Transcript length: 555 bps, Translation length: 164 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000393212.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000398251 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000393212.3 LRRIQ1-007

Summary