Transcript: ENST00000254853.5 SLC52A1-001

Description

solute carrier family 52 (riboflavin transporter), member 1 [Source:HGNC Symbol;Acc:30225]

Gene Synonyms

FLJ10060, GPCR42, GPR172B, PAR2, RBFVD, RFT1, RFVT1, hRFT1

Location

About this transcript

This transcript has 5 exons, is annotated with 23 domains and features, is associated with 1646 variant alleles and maps to 317 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000512825.2	SLC52A1-002	2989	350aa	ENSP00000443026.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H5Y1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000424747.1	SLC52A1-201	2412	448aa	ENSP00000399979.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11066	Q9NWF4	NM_001104577.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000254853.5	SLC52A1-001	2377	448aa	ENSP00000254853.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11066	Q9NWF4	NM_017986.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000573674.1	SLC52A1-003	2490	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000575919.1	SLC52A1-004	2385	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 2,377 bps, Translation length: 448 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9NWF4

CCDS

This transcript is a member of the Human CCDS set: CCDS11066

Version

ENST00000254853.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000216913 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.