Transcript: ENST00000418373.1 PDLIM4-004

Description

PDZ and LIM domain 4 [Source:HGNC Symbol;Acc:16501]

Gene Synonyms

RIL

Location

Chromosome 5: 131,597,142-131,607,029 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 3 domains and features, is associated with 3922 variant alleles and maps to 377 oligo probes.

Gene

This transcript is a product of gene ENSG00000131435.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000253754.3	PDLIM4-001	2282	330aa	ENSP00000253754.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4152	C9J542 P50479	NM_003687.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000379018.3	PDLIM4-002	1006	246aa	ENSP00000368303.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47261	C9J542 P50479	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000418373.1	PDLIM4-004	538	121aa	ENSP00000411753.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J542	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000484620.1	PDLIM4-005	456	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000474421.1	PDLIM4-003	1084	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000462597.1	PDLIM4-006	767	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000463615.1	PDLIM4-007	582	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 538 bps, Translation length: 121 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000418373.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000132647 (version 3)

Favourite species

All species

Recent locations

Transcript: ENST00000418373.1 PDLIM4-004

Summary