Transcript: ENST00000379018.3 PDLIM4-002

Description

PDZ and LIM domain 4 [Source:HGNC Symbol;Acc:16501]

Gene Synonyms

RIL

Location

Chromosome 5: 131,593,400-131,608,025 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 8 domains and features, is associated with 6355 variant alleles and maps to 361 oligo probes.

Gene

This transcript is a product of gene ENSG00000131435.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000253754.3	PDLIM4-001	2282	330aa	ENSP00000253754.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4152	C9J542 P50479	NM_003687.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000379018.3	PDLIM4-002	1006	246aa	ENSP00000368303.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47261	C9J542 P50479	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000418373.1	PDLIM4-004	538	121aa	ENSP00000411753.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J542	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000484620.1	PDLIM4-005	456	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000474421.1	PDLIM4-003	1084	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000462597.1	PDLIM4-006	767	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000463615.1	PDLIM4-007	582	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 1,006 bps, Translation length: 246 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P50479

CCDS

This transcript is a member of the Human CCDS set: CCDS47261

Version

ENST00000379018.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000132645 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000379018.3 PDLIM4-002

Summary