Transcript: ENST00000593829.1 LSM4-001

Description

LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Source:HGNC Symbol;Acc:17259]

Gene Synonyms

GRP, YER112W

Location

About this transcript

This transcript has 5 exons, is annotated with 6 domains and features, is associated with 8080 variant alleles and maps to 408 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000593829.1	LSM4-001	1908	139aa	ENSP00000469468.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12374	Q9Y4Z0 U3KQK1	NM_012321.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000252816.6	LSM4-006	986	125aa	ENSP00000475950.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS62601	U3KQK1	NM_001252129.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000594828.3	LSM4-004	807	238aa	ENSP00000477443.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000597776.1	LSM4-005	446	109aa	ENSP00000476184.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		U3KQS7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000600289.2	LSM4-003	1113	69aa	ENSP00000469028.1	Nonsense mediated decay		M0QXB0	-	-
ENST00000593564.2	LSM4-002	656	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 1,908 bps, Translation length: 139 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9Y4Z0

CCDS

This transcript is a member of the Human CCDS set: CCDS12374

Version

ENST00000593829.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000466321 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.