Transcript: ENST00000593564.2 LSM4-002

Description

LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Source:HGNC Symbol;Acc:17259]

Gene Synonyms

GRP, YER112W

Location

About this transcript

This transcript has 3 exons, is associated with 4941 variant alleles and maps to 160 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000593829.1	LSM4-001	1908	139aa	ENSP00000469468.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12374	Q9Y4Z0 U3KQK1	NM_012321.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000252816.6	LSM4-006	986	125aa	ENSP00000475950.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS62601	U3KQK1	NM_001252129.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000594828.3	LSM4-004	807	238aa	ENSP00000477443.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000597776.1	LSM4-005	446	109aa	ENSP00000476184.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		U3KQS7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000600289.2	LSM4-003	1113	69aa	ENSP00000469028.1	Nonsense mediated decay		M0QXB0	-	-
ENST00000593564.2	LSM4-002	656	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 656 bps,

Version

ENST00000593564.2

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000466326 (version 2)