Transcript: ENST00000390009.3 ACTN4-010

Description

actinin, alpha 4 [Source:HGNC Symbol;Acc:166]

Gene Synonyms

ACTININ-4, FSGS, FSGS1

Location

Chromosome 19: 39,138,378-39,220,087 forward strand.

About this transcript

This transcript has 14 exons, is annotated with 30 domains and features, is associated with 38185 variant alleles and maps to 305 oligo probes.

Gene

This transcript is a product of gene ENSG00000130402.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000252699.2	ACTN4-001	4963	911aa	ENSP00000252699.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12518	O43707 Q96BG6	NM_004924.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000440400.1	ACTN4-004	3180	342aa	ENSP00000398393.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7C144	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000390009.3	ACTN4-010	2102	692aa	ENSP00000439497.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		O43707 Q96BG6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000424234.2	ACTN4-201	1625	521aa	ENSP00000411187.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5GXS2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000586538.1	ACTN4-012	546	182aa	ENSP00000465176.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EJH8	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000589528.1	ACTN4-013	441	105aa	ENSP00000467190.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000497637.1	ACTN4-005	877	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000489451.1	ACTN4-003	654	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000495553.1	ACTN4-002	586	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000477174.1	ACTN4-006	544	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000588618.1	ACTN4-007	1729	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 14, Coding exons: 14, Transcript length: 2,102 bps, Translation length: 692 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O43707

Version

ENST00000390009.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000459235 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000390009.3 ACTN4-010

Summary