Transcript: ENST00000489451.1 ACTN4-003

Description

actinin, alpha 4 [Source:HGNC Symbol;Acc:166]

Gene Synonyms

ACTININ-4, FSGS, FSGS1

Location

Chromosome 19: 39,201,473-39,207,757 forward strand.

About this transcript

This transcript has 3 exons, is associated with 2787 variant alleles and maps to 100 oligo probes.

Gene

This transcript is a product of gene ENSG00000130402.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000252699.2	ACTN4-001	4963	911aa	ENSP00000252699.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12518	O43707 Q96BG6	NM_004924.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000440400.1	ACTN4-004	3180	342aa	ENSP00000398393.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7C144	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000390009.3	ACTN4-010	2102	692aa	ENSP00000439497.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		O43707 Q96BG6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000424234.2	ACTN4-201	1625	521aa	ENSP00000411187.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5GXS2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000586538.1	ACTN4-012	546	182aa	ENSP00000465176.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EJH8	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000589528.1	ACTN4-013	441	105aa	ENSP00000467190.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000497637.1	ACTN4-005	877	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000489451.1	ACTN4-003	654	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000495553.1	ACTN4-002	586	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000477174.1	ACTN4-006	544	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000588618.1	ACTN4-007	1729	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 654 bps,

Version

ENST00000489451.1

Type

Processed transcript

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000268093 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000489451.1 ACTN4-003

Summary