Transcript: ENST00000592175.1 KDM4B-005

Description

lysine (K)-specific demethylase 4B [Source:HGNC Symbol;Acc:29136]

Gene Synonyms

JHDM3B, JMJD2B, KIAA0876, TDRD14B

Location

Chromosome 19: 5,047,009-5,082,448 forward strand.

About this transcript

This transcript has 5 exons, is associated with 17911 variant alleles and maps to 81 oligo probes.

Gene

This transcript is a product of gene ENSG00000127663.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000159111.4	KDM4B-001	5593	1096aa	ENSP00000159111.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12138	K7ES23 O94953	NM_015015.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000536461.1	KDM4B-002	5027	1130aa	ENSP00000440495.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5GX28 K7ES23	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000381759.4	KDM4B-011	3058	448aa	ENSP00000371178.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7ES23 O94953	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000588361.1	KDM4B-012	3039	623aa	ENSP00000467678.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000588337.1	KDM4B-004	504	120aa	ENSP00000468514.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7ES23	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000592175.1	KDM4B-005	562	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000588961.1	KDM4B-008	560	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000588166.1	KDM4B-003	477	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000592159.1	KDM4B-010	411	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000589104.1	KDM4B-007	3470	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 562 bps,

Version

ENST00000592175.1

Type

Processed transcript

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000450561 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000592175.1 KDM4B-005

Summary