Transcript: ENST00000588361.1 KDM4B-012

Description

lysine (K)-specific demethylase 4B [Source:HGNC Symbol;Acc:29136]

Gene Synonyms

JHDM3B, JMJD2B, KIAA0876, TDRD14B

Location

Chromosome 19: 5,082,463-5,141,514 forward strand.

About this transcript

This transcript has 12 exons, is annotated with 13 domains and features, is associated with 31393 variant alleles and maps to 335 oligo probes.

Gene

This transcript is a product of gene ENSG00000127663.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000159111.4	KDM4B-001	5593	1096aa	ENSP00000159111.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12138	K7ES23 O94953	NM_015015.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000536461.1	KDM4B-002	5027	1130aa	ENSP00000440495.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5GX28 K7ES23	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000381759.4	KDM4B-011	3058	448aa	ENSP00000371178.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7ES23 O94953	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000588361.1	KDM4B-012	3039	623aa	ENSP00000467678.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000588337.1	KDM4B-004	504	120aa	ENSP00000468514.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7ES23	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000592175.1	KDM4B-005	562	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000588961.1	KDM4B-008	560	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000588166.1	KDM4B-003	477	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000592159.1	KDM4B-010	411	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000589104.1	KDM4B-007	3470	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 12, Coding exons: 12, Transcript length: 3,039 bps, Translation length: 623 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000588361.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000450565 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000588361.1 KDM4B-012

Summary