Transcript: ENST00000489140.1 ATP13A4-008

Description

ATPase type 13A4 [Source:HGNC Symbol;Acc:25422]

Gene Synonyms

DKFZp761I1011, FLJ37958

Location

Chromosome 3: 193,220,334-193,310,900 reverse strand.

About this transcript

This transcript has 4 exons, is associated with 38158 variant alleles and maps to 115 oligo probes.

Gene

This transcript is a product of gene ENSG00000127249.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000342695.4	ATP13A4-003	4208	1196aa	ENSP00000339182.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3304	Q4VNC1	NM_032279.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000392443.3	ATP13A4-007	4016	1177aa	ENSP00000376238.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B7WPN9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000295548.3	ATP13A4-009	2157	576aa	ENSP00000295548.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q4VNC1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000400270.2	ATP13A4-010	1458	212aa	ENSP00000383129.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q4VNC1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000450950.2	ATP13A4-004	3658	83aa	ENSP00000402023.2	Nonsense mediated decay		F8W9W3	-	-
ENST00000428352.1	ATP13A4-001	3056	576aa	ENSP00000395367.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000437904.1	ATP13A4-011	565	122aa	ENSP00000401481.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000482964.1	ATP13A4-006	872	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000489140.1	ATP13A4-008	560	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000490925.1	ATP13A4-002	3070	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000474776.1	ATP13A4-005	228	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 560 bps,

Version

ENST00000489140.1

Type

Processed transcript

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000343022 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000489140.1 ATP13A4-008

Summary