Transcript: ENST00000428352.1 ATP13A4-001

Description

ATPase type 13A4 [Source:HGNC Symbol;Acc:25422]

Gene Synonyms

DKFZp761I1011, FLJ37958

Location

Chromosome 3: 193,119,867-193,185,137 reverse strand.

About this transcript

This transcript has 21 exons, is annotated with 24 domains and features, is associated with 27775 variant alleles and maps to 617 oligo probes.

Gene

This transcript is a product of gene ENSG00000127249.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000342695.4	ATP13A4-003	4208	1196aa	ENSP00000339182.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3304	Q4VNC1	NM_032279.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000392443.3	ATP13A4-007	4016	1177aa	ENSP00000376238.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B7WPN9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000295548.3	ATP13A4-009	2157	576aa	ENSP00000295548.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q4VNC1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000400270.2	ATP13A4-010	1458	212aa	ENSP00000383129.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q4VNC1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000450950.2	ATP13A4-004	3658	83aa	ENSP00000402023.2	Nonsense mediated decay		F8W9W3	-	-
ENST00000428352.1	ATP13A4-001	3056	576aa	ENSP00000395367.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000437904.1	ATP13A4-011	565	122aa	ENSP00000401481.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000482964.1	ATP13A4-006	872	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000489140.1	ATP13A4-008	560	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000490925.1	ATP13A4-002	3070	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000474776.1	ATP13A4-005	228	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 21, Coding exons: 16, Transcript length: 3,056 bps, Translation length: 576 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000428352.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000157242 (version 3)

Favourite species

All species

Recent locations

Transcript: ENST00000428352.1 ATP13A4-001

Summary