Transcript: ENST00000459982.1 IRF1-004

Description

interferon regulatory factor 1 [Source:HGNC Symbol;Acc:6116]

Gene Synonyms

IRF-1, MAR

Location

Chromosome 5: 131,821,815-131,826,457 reverse strand.

About this transcript

This transcript has 6 exons, is associated with 2164 variant alleles and maps to 292 oligo probes.

Gene

This transcript is a product of gene ENSG00000125347.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000245414.4	IRF1-001	3579	325aa	ENSP00000245414.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4155	C9JD95 P10914 Q6FHN8 Q75MZ8 R4GNI0	NM_002198.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000405885.2	IRF1-008	2061	325aa	ENSP00000384406.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4155	C9JD95 P10914 Q6FHN8 Q75MZ8 R4GNI0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000458069.1	IRF1-010	885	192aa	ENSP00000396318.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JD95 R4GNI0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000437654.1	IRF1-002	832	198aa	ENSP00000405655.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J9C5 R4GNI0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000476613.1	IRF1-007	523	118aa	ENSP00000473661.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		R4GNI0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000439555.2	IRF1-009	524	51aa	ENSP00000392455.1	Nonsense mediated decay		F8WCM1	-	-
ENST00000463784.1	IRF1-003	520	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000472045.1	IRF1-006	5153	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000459982.1	IRF1-004	1231	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000493208.1	IRF1-005	1023	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 0, Transcript length: 1,231 bps,

Version

ENST00000459982.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000132343 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000459982.1 IRF1-004

Summary