Transcript: ENST00000245414.4 IRF1-001

Description

interferon regulatory factor 1 [Source:HGNC Symbol;Acc:6116]

Gene Synonyms

IRF-1, MAR

Location

Chromosome 5: 131,817,301-131,826,490 reverse strand.

About this transcript

This transcript has 10 exons, is annotated with 15 domains and features, is associated with 4241 variant alleles and maps to 554 oligo probes.

Gene

This transcript is a product of gene ENSG00000125347.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000245414.4	IRF1-001	3579	325aa	ENSP00000245414.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4155	C9JD95 P10914 Q6FHN8 Q75MZ8 R4GNI0	NM_002198.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000405885.2	IRF1-008	2061	325aa	ENSP00000384406.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4155	C9JD95 P10914 Q6FHN8 Q75MZ8 R4GNI0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000458069.1	IRF1-010	885	192aa	ENSP00000396318.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JD95 R4GNI0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000437654.1	IRF1-002	832	198aa	ENSP00000405655.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J9C5 R4GNI0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000476613.1	IRF1-007	523	118aa	ENSP00000473661.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		R4GNI0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000439555.2	IRF1-009	524	51aa	ENSP00000392455.1	Nonsense mediated decay		F8WCM1	-	-
ENST00000463784.1	IRF1-003	520	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000472045.1	IRF1-006	5153	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000459982.1	IRF1-004	1231	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000493208.1	IRF1-005	1023	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 10, Coding exons: 9, Transcript length: 3,579 bps, Translation length: 325 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P10914

CCDS

This transcript is a member of the Human CCDS set: CCDS4155

Version

ENST00000245414.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000132340 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

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Recent locations

Transcript: ENST00000245414.4 IRF1-001

Summary