Transcript: ENST00000244728.5 COL21A1-001

Description

collagen, type XXI, alpha 1 [Source:HGNC Symbol;Acc:17025]

Gene Synonyms

COL1AL, COLA1L, dJ682J15.1, dJ708F5.1

Location

Chromosome 6: 55,921,388-56,112,544 reverse strand.

About this transcript

This transcript has 30 exons, is annotated with 27 domains and features, is associated with 86099 variant alleles and maps to 811 oligo probes.

Gene

This transcript is a product of gene ENSG00000124749.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000244728.5	COL21A1-001	4339	957aa	ENSP00000244728.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS55025	A6PVD9 Q96P44	NM_030820.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000535941.1	COL21A1-202	4172	957aa	ENSP00000444384.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A6PVD9 F5GZK2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000370819.1	COL21A1-002	4094	954aa	ENSP00000359855.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A6PVD9 Q96P44	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000370808.2	COL21A1-201	2038	323aa	ENSP00000359844.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q96P44	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000370817.3	COL21A1-005	624	136aa	ENSP00000359853.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A6PVD9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000456983.1	COL21A1-003	480	125aa	ENSP00000390958.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000488912.1	COL21A1-010	2327	79aa	ENSP00000433624.1	Nonsense mediated decay		H0YDH6	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000467045.1	COL21A1-006	2291	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000469682.1	COL21A1-007	778	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000484987.1	COL21A1-008	598	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000467216.2	COL21A1-009	277	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000482933.1	COL21A1-011	1413	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000461489.1	COL21A1-004	555	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 30, Coding exons: 29, Transcript length: 4,339 bps, Translation length: 957 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q96P44

CCDS

This transcript is a member of the Human CCDS set: CCDS55025

Version

ENST00000244728.5

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000041004 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000244728.5 COL21A1-001

Summary