Transcript: ENST00000417094.1 TSFM-003

Description

Ts translation elongation factor, mitochondrial [Source:HGNC Symbol;Acc:12367]

Gene Synonyms

EF-TS, EF-Tsmt, EFTS, EFTSMT

Location

Chromosome 12: 58,176,564-58,179,983 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 5 domains and features, is associated with 2057 variant alleles and maps to 144 oligo probes.

Gene

This transcript is a product of gene ENSG00000123297.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000454289.3	TSFM-001	2192	325aa	ENSP00000388330.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8958	C9JG32 C9JT21 E5KS95 P43897	NM_005726.5	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000540550.1	TSFM-202	1951	167aa	ENSP00000440987.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53811	P43897	NM_001172695.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000350762.5	TSFM-201	1450	285aa	ENSP00000242983.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8W6R3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000323833.8	TSFM-002	1218	346aa	ENSP00000313877.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53809	P43897	NM_001172696.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000543727.1	TSFM-203	930	215aa	ENSP00000439342.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53810	C9JG32 P43897	NM_001172697.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000550559.1	TSFM-008	897	230aa	ENSP00000448575.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JG32 F8VS27	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000548851.1	TSFM-009	794	200aa	ENSP00000450041.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JG32 F8VPA7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000457189.1	TSFM-006	689	168aa	ENSP00000389162.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JG32 C9JT21	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000434359.1	TSFM-005	589	140aa	ENSP00000390679.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JG32	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000417094.1	TSFM-003	558	89aa	ENSP00000406339.1	Nonsense mediated decay		F8WCK2	-	-
ENST00000497617.1	TSFM-007	770	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 558 bps, Translation length: 89 residues

Version

ENST00000417094.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000329194 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000417094.1 TSFM-003

Summary