Transcript: ENST00000419470.2 SFTPA1-008

Description

surfactant protein A1 [Source:HGNC Symbol;Acc:10798]

Gene Synonyms

COLEC4, COLEC5, PSAP, PSP-A, PSPA, SFTP1, SFTPA, SFTPA1B, SFTPA2B, SP-A, SP-A1, SPA, SPA1, SPA2, SPAII

Location

Chromosome 10: 81,370,701-81,373,954 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 13 domains and features, is associated with 1915 variant alleles and maps to 583 oligo probes.

Gene

This transcript is a product of gene ENSG00000122852.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000398636.3	SFTPA1-203	2212	248aa	ENSP00000381633.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44445	B4DNR9 B4DNW5 B7Z4Y4 J3KPA7 Q8IWL2	NM_005411.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000428376.2	SFTPA1-204	2141	248aa	ENSP00000411102.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44445	B4DNR9 B4DNW5 B7Z4Y4 J3KPA7 Q8IWL2	NM_001164647.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000372313.5	SFTPA1-202	1015	189aa	ENSP00000361387.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DNW5 B7Z4Y4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000419470.2	SFTPA1-008	953	263aa	ENSP00000397082.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44444	B4DNR9 B4DNW5 B7Z4Y4 J3KPA7 Q8IWL2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000372308.3	SFTPA1-201	865	245aa	ENSP00000361382.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KPA7	NM_001093770.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000439264.1	SFTPA1-009	596	158aa	ENSP00000401649.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q8IWL2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000429958.1	SFTPA1-007	527	158aa	ENSP00000395527.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q8IWL2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000486922.1	SFTPA1-011	342	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 5, Transcript length: 953 bps, Translation length: 263 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8IWL2

CCDS

This transcript is a member of the Human CCDS set: CCDS44444

Version

ENST00000419470.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000048958 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000419470.2 SFTPA1-008

Summary