Transcript: ENST00000532681.1 PEX16-003

Description

peroxisomal biogenesis factor 16 [Source:HGNC Symbol;Acc:8857]

Gene Synonyms

PBD8A, PBD8B

Location

Chromosome 11: 45,931,756-45,940,363 reverse strand.

About this transcript

This transcript has 11 exons, is annotated with 7 domains and features, is associated with 4338 variant alleles and maps to 427 oligo probes.

Gene

This transcript is a product of gene ENSG00000121680.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000532681.1	PEX16-003	1639	241aa	ENSP00000434654.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PLS4 E9PP98	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000241041.3	PEX16-002	1479	346aa	ENSP00000241041.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7917	E9PLS4 Q9Y5Y5	NM_057174.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000378750.5	PEX16-001	1335	336aa	ENSP00000368024.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS31472	E9PLS4 E9PP98 Q9Y5Y5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000525192.1	PEX16-006	903	160aa	ENSP00000431309.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PLS4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000533151.1	PEX16-007	563	183aa	ENSP00000433045.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PMM3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000528674.1	PEX16-004	795	64aa	ENSP00000434060.1	Nonsense mediated decay		E9PSC6	-	-
ENST00000529030.1	PEX16-005	794	60aa	ENSP00000432486.1	Nonsense mediated decay		E9PQW0	-	-
ENST00000525229.1	PEX16-008	588	52aa	ENSP00000431132.1	Nonsense mediated decay		E9PMS3	-	-
ENST00000532554.1	PEX16-011	546	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000523721.2	PEX16-010	325	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000527371.1	PEX16-009	362	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 11, Coding exons: 8, Transcript length: 1,639 bps, Translation length: 241 residues

Version

ENST00000532681.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Stop codons

This transcript has a variant, rs1132349, that causes a stop codon to be gained in at least 10% of HapMap or 1000 Genome population(s) CSHL-HAPMAP:HapMap-YRI, CSHL-HAPMAP:HapMap-HCB, CSHL-HAPMAP:HapMap-CEU, CSHL-HAPMAP:HapMap-JPT.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000392399 (version 1)

Annotation Attributes

dotter confirmed [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000532681.1 PEX16-003

Summary