Transcript: ENST00000378750.5 PEX16-001

Description

peroxisomal biogenesis factor 16 [Source:HGNC Symbol;Acc:8857]

Gene Synonyms

PBD8A, PBD8B

Location

Chromosome 11: 45,931,725-45,939,606 reverse strand.

About this transcript

This transcript has 11 exons, is annotated with 7 domains and features, is associated with 4010 variant alleles and maps to 499 oligo probes.

Gene

This transcript is a product of gene ENSG00000121680.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000532681.1	PEX16-003	1639	241aa	ENSP00000434654.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PLS4 E9PP98	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000241041.3	PEX16-002	1479	346aa	ENSP00000241041.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7917	E9PLS4 Q9Y5Y5	NM_057174.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000378750.5	PEX16-001	1335	336aa	ENSP00000368024.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS31472	E9PLS4 E9PP98 Q9Y5Y5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000525192.1	PEX16-006	903	160aa	ENSP00000431309.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PLS4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000533151.1	PEX16-007	563	183aa	ENSP00000433045.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PMM3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000528674.1	PEX16-004	795	64aa	ENSP00000434060.1	Nonsense mediated decay		E9PSC6	-	-
ENST00000529030.1	PEX16-005	794	60aa	ENSP00000432486.1	Nonsense mediated decay		E9PQW0	-	-
ENST00000525229.1	PEX16-008	588	52aa	ENSP00000431132.1	Nonsense mediated decay		E9PMS3	-	-
ENST00000532554.1	PEX16-011	546	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000523721.2	PEX16-010	325	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000527371.1	PEX16-009	362	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 11, Coding exons: 11, Transcript length: 1,335 bps, Translation length: 336 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9Y5Y5

CCDS

This transcript is a member of the Human CCDS set: CCDS31472

Version

ENST00000378750.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Stop codons

This transcript has a variant, rs1132349, that causes a stop codon to be gained in at least 10% of HapMap or 1000 Genome population(s) CSHL-HAPMAP:HapMap-CEU, CSHL-HAPMAP:HapMap-JPT, CSHL-HAPMAP:HapMap-HCB, CSHL-HAPMAP:HapMap-YRI.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000392398 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000378750.5 PEX16-001

Summary