Transcript: ENST00000456133.1 EPCAM-003

Description

epithelial cell adhesion molecule [Source:HGNC Symbol;Acc:11529]

Gene Synonyms

17-1A, 323/A3, CD326, CO-17A, DIAR5, EGP-2, EGP314, EGP34, EGP40, ESA, Ep-CAM, GA733-2, HEA125, HNPCC8, KS1/4, KSA, Ly74, M1S2, M4S1, MH99, MIC18, MK-1, MOC31, TACST-1, TACSTD1, TROP1

Location

Chromosome 2: 47,572,302-47,614,740 forward strand.

About this transcript

This transcript has 11 exons, is annotated with 10 domains and features, is associated with 28323 variant alleles and maps to 402 oligo probes.

Gene

This transcript is a product of gene ENSG00000119888.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000263735.4	EPCAM-001	1724	314aa	ENSP00000263735.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1833	P16422	NM_002354.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000405271.1	EPCAM-002	1530	342aa	ENSP00000385476.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B5MCA4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000419334.1	EPCAM-006	609	199aa	ENSP00000389028.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JKY3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000456133.1	EPCAM-003	1501	342aa	ENSP00000410675.1	Nonsense mediated decay		B5MCA4	-	-
ENST00000490733.1	EPCAM-005	752	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000474691.1	EPCAM-004	714	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 11, Coding exons: 9, Transcript length: 1,501 bps, Translation length: 342 residues

Version

ENST00000456133.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000323638 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000456133.1 EPCAM-003

Summary