Transcript: ENST00000263735.4 EPCAM-001

Description

epithelial cell adhesion molecule [Source:HGNC Symbol;Acc:11529]

Gene Synonyms

17-1A, 323/A3, CD326, CO-17A, DIAR5, EGP-2, EGP314, EGP34, EGP40, ESA, Ep-CAM, GA733-2, HEA125, HNPCC8, KS1/4, KSA, Ly74, M1S2, M4S1, MH99, MIC18, MK-1, MOC31, TACST-1, TACSTD1, TROP1

Location

Chromosome 2: 47,596,287-47,614,173 forward strand.

About this transcript

This transcript has 9 exons, is annotated with 12 domains and features, is associated with 14018 variant alleles and maps to 506 oligo probes.

Gene

This transcript is a product of gene ENSG00000119888.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000263735.4	EPCAM-001	1724	314aa	ENSP00000263735.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1833	P16422	NM_002354.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000405271.1	EPCAM-002	1530	342aa	ENSP00000385476.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B5MCA4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000419334.1	EPCAM-006	609	199aa	ENSP00000389028.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JKY3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000456133.1	EPCAM-003	1501	342aa	ENSP00000410675.1	Nonsense mediated decay		B5MCA4	-	-
ENST00000490733.1	EPCAM-005	752	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000474691.1	EPCAM-004	714	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 1,724 bps, Translation length: 314 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P16422

CCDS

This transcript is a member of the Human CCDS set: CCDS1833

Version

ENST00000263735.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000250792 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000263735.4 EPCAM-001

Summary