Transcript: ENST00000238112.3 CPSF3-001

Description

cleavage and polyadenylation specific factor 3, 73kDa [Source:HGNC Symbol;Acc:2326]

Gene Synonyms

CPSF-73, CPSF73, YSH1

Location

About this transcript

This transcript has 18 exons, is annotated with 11 domains and features, is associated with 21378 variant alleles and maps to 537 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000460593.1	CPSF3-002	3157	647aa	ENSP00000418957.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JZH6 G5E9W3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000238112.3	CPSF3-001	2345	684aa	ENSP00000238112.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1664	C9JZH6 G5E9W3 Q9UKF6	NM_016207.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000475482.1	CPSF3-003	871	136aa	ENSP00000419744.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JZH6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000489403.1	CPSF3-005	688	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000489629.1	CPSF3-004	547	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 18, Coding exons: 18, Transcript length: 2,345 bps, Translation length: 684 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9UKF6

CCDS

This transcript is a member of the Human CCDS set: CCDS1664

Version

ENST00000238112.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000206843 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.