Transcript: ENST00000236698.5 STAG1-002

Description

stromal antigen 1 [Source:HGNC Symbol;Acc:11354]

Gene Synonyms

SA-1, SA1, SCC3A

Location

Chromosome 3: 136,055,078-136,471,220 reverse strand.

About this transcript

This transcript has 33 exons, is annotated with 13 domains and features, is associated with 204486 variant alleles and maps to 944 oligo probes.

Gene

This transcript is a product of gene ENSG00000118007.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000383202.2	STAG1-001	6053	1258aa	ENSP00000372689.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3090	Q4LE48 Q8WVM7	NM_005862.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000236698.5	STAG1-002	5951	1221aa	ENSP00000236698.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q6P275	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000434713.2	STAG1-201	5204	998aa	ENSP00000404396.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q68DW7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000536929.1	STAG1-202	2883	842aa	ENSP00000445787.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H1C4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000480733.1	STAG1-005	1304	232aa	ENSP00000420789.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JJQ0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000492318.1	STAG1-006	570	190aa	ENSP00000419317.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000483235.1	STAG1-003	5206	101aa	ENSP00000419093.1	Nonsense mediated decay		F8WF82	-	-
ENST00000487065.1	STAG1-004	2914	161aa	ENSP00000418472.1	Nonsense mediated decay		F8WCB3	-	-
ENST00000462818.1	STAG1-008	1227	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000465961.1	STAG1-007	746	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 33, Coding exons: 32, Transcript length: 5,951 bps, Translation length: 1,221 residues

Version

ENST00000236698.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000357403 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000236698.5 STAG1-002

Summary