Transcript: ENST00000475438.1 ITGB6-003

Description

integrin, beta 6 [Source:HGNC Symbol;Acc:6161]

Location

Chromosome 2: 160,958,076-160,968,621 reverse strand.

About this transcript

This transcript has 4 exons, is associated with 4351 variant alleles and maps to 207 oligo probes.

Gene

This transcript is a product of gene ENSG00000115221.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000283249.2	ITGB6-001	4675	788aa	ENSP00000283249.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2212	P18564	NM_001282388.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000428609.2	ITGB6-006	2576	746aa	ENSP00000408024.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PEE8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000409872.1	ITGB6-007	2501	788aa	ENSP00000386367.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2212	P18564	NM_000888.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000409967.2	ITGB6-004	2292	681aa	ENSP00000386828.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS63040	C9JA97	NM_001282355.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000409583.1	ITGB6-002	4500	70aa	ENSP00000386477.1	Nonsense mediated decay		F8WBJ8	-	-
ENST00000485635.1	ITGB6-005	1560	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000498478.1	ITGB6-008	705	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000459712.1	ITGB6-009	490	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000475438.1	ITGB6-003	354	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000477514.1	ITGB6-010	331	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 354 bps,

Version

ENST00000475438.1

Type

Processed transcript

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000334013 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000475438.1 ITGB6-003

Summary