Transcript: ENST00000409872.1 ITGB6-007

Description

integrin, beta 6 [Source:HGNC Symbol;Acc:6161]

Location

Chromosome 2: 160,958,247-161,056,815 reverse strand.

About this transcript

This transcript has 16 exons, is annotated with 43 domains and features, is associated with 44596 variant alleles and maps to 562 oligo probes.

Gene

This transcript is a product of gene ENSG00000115221.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000283249.2	ITGB6-001	4675	788aa	ENSP00000283249.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2212	P18564	NM_001282388.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000428609.2	ITGB6-006	2576	746aa	ENSP00000408024.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PEE8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000409872.1	ITGB6-007	2501	788aa	ENSP00000386367.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2212	P18564	NM_000888.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000409967.2	ITGB6-004	2292	681aa	ENSP00000386828.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS63040	C9JA97	NM_001282355.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000409583.1	ITGB6-002	4500	70aa	ENSP00000386477.1	Nonsense mediated decay		F8WBJ8	-	-
ENST00000485635.1	ITGB6-005	1560	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000498478.1	ITGB6-008	705	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000459712.1	ITGB6-009	490	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000475438.1	ITGB6-003	354	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000477514.1	ITGB6-010	331	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 16, Coding exons: 15, Transcript length: 2,501 bps, Translation length: 788 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P18564

CCDS

This transcript is a member of the Human CCDS set: CCDS2212

Version

ENST00000409872.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000334017 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000409872.1 ITGB6-007

Summary