Transcript: ENST00000407449.1 PIKFYVE-004

Description

phosphoinositide kinase, FYVE finger containing [Source:HGNC Symbol;Acc:23785]

Gene Synonyms

CFD, FAB1, KIAA0981, MGC40423, PIKfyve, PIP5K, PIP5K3, ZFYVE29, p235

Location

Chromosome 2: 209,131,002-209,169,852 forward strand.

About this transcript

This transcript has 12 exons, is annotated with 12 domains and features, is associated with 16433 variant alleles and maps to 322 oligo probes.

Gene

This transcript is a product of gene ENSG00000115020.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000264380.4	PIKFYVE-001	9901	2098aa	ENSP00000264380.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2382	Q9Y2I7	NM_015040.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000452564.1	PIKFYVE-006	4214	1384aa	ENSP00000405736.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PDH4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000392202.3	PIKFYVE-002	2039	451aa	ENSP00000376038.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33368	Q9Y2I7	NM_152671.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000407449.1	PIKFYVE-004	1898	548aa	ENSP00000384356.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS54431	Q9Y2I7	NM_001178000.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000308862.6	PIKFYVE-005	1640	462aa	ENSP00000308715.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9Y2I7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000422495.1	PIKFYVE-009	792	241aa	ENSP00000414477.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JL08	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000443896.1	PIKFYVE-003	3282	158aa	ENSP00000407692.1	Nonsense mediated decay		F8WEZ0	-	-
ENST00000474721.1	PIKFYVE-008	538	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000477200.1	PIKFYVE-007	636	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 12, Coding exons: 11, Transcript length: 1,898 bps, Translation length: 548 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9Y2I7

CCDS

This transcript is a member of the Human CCDS set: CCDS54431

Version

ENST00000407449.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000319312 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000407449.1 PIKFYVE-004

Summary