Transcript: ENST00000443896.1 PIKFYVE-003

Description

phosphoinositide kinase, FYVE finger containing [Source:HGNC Symbol;Acc:23785]

Gene Synonyms

CFD, FAB1, KIAA0981, MGC40423, PIKfyve, PIP5K, PIP5K3, ZFYVE29, p235

Location

Chromosome 2: 209,130,991-209,190,831 forward strand.

About this transcript

This transcript has 19 exons, is associated with 26033 variant alleles and maps to 508 oligo probes.

Gene

This transcript is a product of gene ENSG00000115020.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000264380.4	PIKFYVE-001	9901	2098aa	ENSP00000264380.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2382	Q9Y2I7	NM_015040.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000452564.1	PIKFYVE-006	4214	1384aa	ENSP00000405736.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PDH4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000392202.3	PIKFYVE-002	2039	451aa	ENSP00000376038.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33368	Q9Y2I7	NM_152671.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000407449.1	PIKFYVE-004	1898	548aa	ENSP00000384356.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS54431	Q9Y2I7	NM_001178000.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000308862.6	PIKFYVE-005	1640	462aa	ENSP00000308715.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9Y2I7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000422495.1	PIKFYVE-009	792	241aa	ENSP00000414477.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JL08	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000443896.1	PIKFYVE-003	3282	158aa	ENSP00000407692.1	Nonsense mediated decay		F8WEZ0	-	-
ENST00000474721.1	PIKFYVE-008	538	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000477200.1	PIKFYVE-007	636	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 19, Coding exons: 4, Transcript length: 3,282 bps, Translation length: 158 residues

Version

ENST00000443896.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000319311 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000443896.1 PIKFYVE-003

Summary