Transcript: ENST00000547451.1 CYP27B1-003

Description

cytochrome P450, family 27, subfamily B, polypeptide 1 [Source:HGNC Symbol;Acc:2606]

Gene Synonyms

CP2B, CYP1, CYP1ALPHA, CYP1alpha, CYP27B, P450c1, PDDR, VDD1, VDDR, VDDRI, VDR

Location

Chromosome 12: 58,158,327-58,159,468 reverse strand.

About this transcript

This transcript has 3 exons, is associated with 775 variant alleles and maps to 187 oligo probes.

Gene

This transcript is a product of gene ENSG00000111012.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000228606.4	CYP27B1-001	2540	508aa	ENSP00000228606.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8954	F8VWR7 O15528 Q548T3 Q9UP42	NM_000785.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000546567.1	CYP27B1-004	976	157aa	ENSP00000449472.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VWR7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000546609.1	CYP27B1-013	702	234aa	ENSP00000476959.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000546496.1	CYP27B1-012	244	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000547344.1	CYP27B1-002	2474	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000547451.1	CYP27B1-003	973	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000552186.1	CYP27B1-011	548	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 973 bps,

Version

ENST00000547451.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000409256 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000547451.1 CYP27B1-003

Summary