Transcript: ENST00000228606.4 CYP27B1-001

Description

cytochrome P450, family 27, subfamily B, polypeptide 1 [Source:HGNC Symbol;Acc:2606]

Gene Synonyms

CP2B, CYP1, CYP1ALPHA, CYP1alpha, CYP27B, P450c1, PDDR, VDD1, VDDR, VDDRI, VDR

Location

Chromosome 12: 58,156,122-58,161,034 reverse strand.

About this transcript

This transcript has 9 exons, is annotated with 20 domains and features, is associated with 2802 variant alleles and maps to 411 oligo probes.

Gene

This transcript is a product of gene ENSG00000111012.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000228606.4	CYP27B1-001	2540	508aa	ENSP00000228606.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8954	F8VWR7 O15528 Q548T3 Q9UP42	NM_000785.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000546567.1	CYP27B1-004	976	157aa	ENSP00000449472.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VWR7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000546609.1	CYP27B1-013	702	234aa	ENSP00000476959.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000546496.1	CYP27B1-012	244	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000547344.1	CYP27B1-002	2474	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000547451.1	CYP27B1-003	973	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000552186.1	CYP27B1-011	548	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 2,540 bps, Translation length: 508 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O15528

CCDS

This transcript is a member of the Human CCDS set: CCDS8954

Version

ENST00000228606.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000409248 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000228606.4 CYP27B1-001

Summary