Transcript: ENST00000262613.5 SLC9A3R1-001

Description

solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3 regulator 1 [Source:HGNC Symbol;Acc:11075]

Gene Synonyms

EBP50, NHERF, NHERF-1, NHERF1, NPHLOP2

Location

About this transcript

This transcript has 6 exons, is annotated with 17 domains and features, is associated with 9569 variant alleles and maps to 405 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000262613.5	SLC9A3R1-001	1969	358aa	ENSP00000262613.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11705	B3KY21 O14745	NM_004252.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000413388.2	SLC9A3R1-002	1285	202aa	ENSP00000464982.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B3KY21	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000583369.1	SLC9A3R1-006	841	215aa	ENSP00000464321.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3QRP6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000581356.1	SLC9A3R1-005	519	35aa	ENSP00000464117.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000578958.1	SLC9A3R1-004	714	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 1,969 bps, Translation length: 358 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O14745

CCDS

This transcript is a member of the Human CCDS set: CCDS11705

Version

ENST00000262613.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000443671 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.