Transcript: ENST00000395774.1 RAI1-002

Description

retinoic acid induced 1 [Source:HGNC Symbol;Acc:9834]

Gene Synonyms

DKFZP434A139, KIAA1820, MGC12824, SMCR, SMS

Location

Chromosome 17: 17,685,446-17,699,090 forward strand.

About this transcript

This transcript has 2 exons, is annotated with 13 domains and features, is associated with 7897 variant alleles and maps to 209 oligo probes.

Gene

This transcript is a product of gene ENSG00000108557.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000353383.1	RAI1-001	7662	1906aa	ENSP00000323074.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11188	A8MXE8 J3QLL5 Q7Z5J4	NM_030665.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000261641.6	RAI1-201	4923	1640aa	ENSP00000261641.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A8MXE8 E7EVZ3 J3QLL5	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000395774.1	RAI1-002	2928	942aa	ENSP00000379120.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A8MXE8 J3QLL5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000471135.2	RAI1-006	570	65aa	ENSP00000463607.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3QLL5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000583166.1	RAI1-008	489	156aa	ENSP00000463984.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000489697.1	RAI1-004	1570	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000582514.1	RAI1-009	878	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 1, Transcript length: 2,928 bps, Translation length: 942 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000395774.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000131776 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000395774.1 RAI1-002

Summary