Transcript: ENST00000467928.2 TLX1-003

Description

T-cell leukemia homeobox 1 [Source:HGNC Symbol;Acc:5056]

Gene Synonyms

HOX11, TCL3

Location

About this transcript

This transcript has 3 exons, is annotated with 16 domains and features, is associated with 3215 variant alleles and maps to 314 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000370196.6	TLX1-001	3910	330aa	ENSP00000359215.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7510	P31314	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000467928.2	TLX1-003	1838	257aa	ENSP00000434914.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS55725	P31314	NM_005521.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000463716.2	TLX1-002	1440	218aa	ENSP00000434358.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V1B7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000533319.1	TLX1-004	334	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000525019.1	TLX1-005	226	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 1,838 bps, Translation length: 257 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P31314

CCDS

This transcript is a member of the Human CCDS set: CCDS55725

Version

ENST00000467928.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000409763 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.