Transcript: ENST00000224140.5 SETX-001

Description

senataxin [Source:HGNC Symbol;Acc:445]

Gene Synonyms

ALS4, AOA2, KIAA0625, SCAR1, bA479K20.2

Location

Chromosome 9: 135,136,743-135,230,372 reverse strand.

About this transcript

This transcript has 26 exons, is annotated with 15 domains and features, is associated with 47507 variant alleles and maps to 943 oligo probes.

Gene

This transcript is a product of gene ENSG00000107290.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000372169.2	SETX-201	11103	2706aa	ENSP00000361242.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DYE6 Q7Z333	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000224140.5	SETX-001	11100	2677aa	ENSP00000224140.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6947	Q7Z333	NM_015046.5	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000393220.1	SETX-202	10917	2644aa	ENSP00000376913.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q7Z333	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000436441.1	SETX-003	5730	948aa	ENSP00000409143.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DYE6	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000477049.1	SETX-004	4067	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000474172.1	SETX-006	719	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000464133.1	SETX-005	631	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 26, Coding exons: 24, Transcript length: 11,100 bps, Translation length: 2,677 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q7Z333

CCDS

This transcript is a member of the Human CCDS set: CCDS6947

Version

ENST00000224140.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000054774 (version 3)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000224140.5 SETX-001

Summary