Transcript: ENST00000436441.1 SETX-003

Description

senataxin [Source:HGNC Symbol;Acc:445]

Gene Synonyms

ALS4, AOA2, KIAA0625, SCAR1, bA479K20.2

Location

Chromosome 9: 135,136,743-135,187,243 reverse strand.

About this transcript

This transcript has 17 exons, is annotated with 11 domains and features, is associated with 24857 variant alleles and maps to 651 oligo probes.

Gene

This transcript is a product of gene ENSG00000107290.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000372169.2	SETX-201	11103	2706aa	ENSP00000361242.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DYE6 Q7Z333	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000224140.5	SETX-001	11100	2677aa	ENSP00000224140.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6947	Q7Z333	NM_015046.5	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000393220.1	SETX-202	10917	2644aa	ENSP00000376913.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q7Z333	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000436441.1	SETX-003	5730	948aa	ENSP00000409143.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DYE6	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000477049.1	SETX-004	4067	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000474172.1	SETX-006	719	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000464133.1	SETX-005	631	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 17, Coding exons: 17, Transcript length: 5,730 bps, Translation length: 948 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000436441.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000054775 (version 2)

Favourite species

All species

Recent locations

Transcript: ENST00000436441.1 SETX-003

Summary