Transcript: ENST00000395925.3 GLI3-001

Description

GLI family zinc finger 3 [Source:HGNC Symbol;Acc:4319]

Gene Synonyms

ACLS, GCPS, GLI3-190, GLI3FL, PAP-A, PAPA, PAPA1, PAPB, PHS, PPDIV

Location

About this transcript

This transcript has 15 exons, is annotated with 35 domains and features, is associated with 121280 variant alleles and maps to 704 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000395925.3	GLI3-001	8208	1580aa	ENSP00000379258.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5465	C9J9N4 P10071	NM_000168.5	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000448703.1	GLI3-005	653	180aa	ENSP00000406135.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J9N4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000437480.1	GLI3-004	451	96aa	ENSP00000407963.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8WEV4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000479210.1	GLI3-002	4968	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000428534.1	GLI3-003	583	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000464291.1	GLI3-006	553	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 15, Coding exons: 14, Transcript length: 8,208 bps, Translation length: 1,580 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P10071

CCDS

This transcript is a member of the Human CCDS set: CCDS5465

Version

ENST00000395925.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000250806 (version 3)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.