Transcript: ENST00000262895.3 GRIK5-002

Description

glutamate receptor, ionotropic, kainate 5 [Source:HGNC Symbol;Acc:4583]

Gene Synonyms

EAA2, GRIK2, GluK5, KA2

Location

About this transcript

This transcript has 19 exons, is annotated with 28 domains and features, is associated with 28413 variant alleles and maps to 720 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000262895.3	GRIK5-002	3493	980aa	ENSP00000262895.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12595	Q16478	NM_002088.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000301218.4	GRIK5-001	3310	981aa	ENSP00000301218.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q16478	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000593562.1	GRIK5-004	3308	980aa	ENSP00000470251.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12595	Q16478	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000594528.1	GRIK5-005	2101	110aa	ENSP00000469135.1	Nonsense mediated decay		M0QXF6	-	-
ENST00000454993.2	GRIK5-003	2370	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000602210.1	GRIK5-006	389	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 19, Coding exons: 19, Transcript length: 3,493 bps, Translation length: 980 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q16478

CCDS

This transcript is a member of the Human CCDS set: CCDS12595

Version

ENST00000262895.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000463453 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.