Transcript: ENST00000496494.1 EYA1-004

Description

eyes absent homolog 1 (Drosophila) [Source:HGNC Symbol;Acc:3519]

Gene Synonyms

BOP, BOR, BOS1, OFC1

Location

Chromosome 8: 72,111,476-72,268,868 reverse strand.

About this transcript

This transcript has 16 exons, is associated with 65527 variant alleles and maps to 483 oligo probes.

Gene

This transcript is a product of gene ENSG00000104313.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000340726.3	EYA1-001	4326	592aa	ENSP00000342626.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34906	Q4A4D0 Q99502	NM_001288574.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000303824.7	EYA1-010	3930	586aa	ENSP00000303221.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A6NCB9 Q4A4D0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000388742.4	EYA1-002	3907	592aa	ENSP00000373394.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34906	Q4A4D0 Q99502	NM_172059.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000388740.3	EYA1-201	3843	559aa	ENSP00000373392.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47873	Q4A4D0 Q99502	NM_172060.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000388741.2	EYA1-012	3404	558aa	ENSP00000373393.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7EQM5 Q4A4D0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000388743.2	EYA1-011	2199	591aa	ENSP00000373395.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8WB53 Q4A4D0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000419131.1	EYA1-005	1723	557aa	ENSP00000410176.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34907	Q4A4D0 Q99502	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000465115.1	EYA1-003	3743	212aa	ENSP00000428391.1	Nonsense mediated decay		E5RIQ7	-	-
ENST00000493349.1	EYA1-008	879	41aa	ENSP00000428517.1	Nonsense mediated decay		E5RHZ7	-	-
ENST00000496494.1	EYA1-004	2373	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000422295.1	EYA1-007	440	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 16, Coding exons: 0, Transcript length: 2,373 bps,

Version

ENST00000496494.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000313791 (version 2)

Favourite species

All species

Recent locations

Transcript: ENST00000496494.1 EYA1-004

Summary