Transcript: ENST00000561603.1 RPAP1-004

Description

RNA polymerase II associated protein 1 [Source:HGNC Symbol;Acc:24567]

Gene Synonyms

DKFZP727M111, FLJ12732, KIAA1403, MGC858

Location

Chromosome 15: 41,809,374-41,836,455 reverse strand.

About this transcript

This transcript has 24 exons, is annotated with 19 domains and features, is associated with 13261 variant alleles and maps to 627 oligo probes.

Gene

This transcript is a product of gene ENSG00000103932.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000304330.4	RPAP1-001	4665	1393aa	ENSP00000306123.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10079	H3BPM3 H3BPY8 Q9BWH6	NM_015540.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000561603.1	RPAP1-004	3906	1128aa	ENSP00000456207.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BPM3 H3BPY8 H3BRE8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000567866.1	RPAP1-010	955	180aa	ENSP00000455381.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BPM3 H3BPY8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000565035.1	RPAP1-012	601	200aa	ENSP00000457203.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BTJ6	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000566863.1	RPAP1-008	545	128aa	ENSP00000455527.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BPY8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000562303.1	RPAP1-005	5897	1315aa	ENSP00000455363.1	Nonsense mediated decay		H3BPM3 H3BPY8 Q9BWH6	-	-
ENST00000568413.1	RPAP1-015	586	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000565167.1	RPAP1-006	1712	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000564934.1	RPAP1-014	639	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000569829.1	RPAP1-009	597	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000563293.1	RPAP1-011	499	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000561631.1	RPAP1-013	401	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 24, Coding exons: 23, Transcript length: 3,906 bps, Translation length: 1,128 residues

Version

ENST00000561603.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000420208 (version 1)

Annotation Attributes

dotter confirmed [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000561603.1 RPAP1-004

Summary