Transcript: ENST00000563293.1 RPAP1-011

Description

RNA polymerase II associated protein 1 [Source:HGNC Symbol;Acc:24567]

Gene Synonyms

DKFZP727M111, FLJ12732, KIAA1403, MGC858

Location

Chromosome 15: 41,827,003-41,828,573 reverse strand.

About this transcript

This transcript has 3 exons, is associated with 692 variant alleles and maps to 65 oligo probes.

Gene

This transcript is a product of gene ENSG00000103932.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000304330.4	RPAP1-001	4665	1393aa	ENSP00000306123.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10079	H3BPM3 H3BPY8 Q9BWH6	NM_015540.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000561603.1	RPAP1-004	3906	1128aa	ENSP00000456207.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BPM3 H3BPY8 H3BRE8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000567866.1	RPAP1-010	955	180aa	ENSP00000455381.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BPM3 H3BPY8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000565035.1	RPAP1-012	601	200aa	ENSP00000457203.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BTJ6	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000566863.1	RPAP1-008	545	128aa	ENSP00000455527.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BPY8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000562303.1	RPAP1-005	5897	1315aa	ENSP00000455363.1	Nonsense mediated decay		H3BPM3 H3BPY8 Q9BWH6	-	-
ENST00000568413.1	RPAP1-015	586	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000565167.1	RPAP1-006	1712	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000564934.1	RPAP1-014	639	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000569829.1	RPAP1-009	597	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000563293.1	RPAP1-011	499	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000561631.1	RPAP1-013	401	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 499 bps,

Version

ENST00000563293.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000420217 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000563293.1 RPAP1-011

Summary