Transcript: ENST00000558614.1 MTFMT-004

Description

mitochondrial methionyl-tRNA formyltransferase [Source:HGNC Symbol;Acc:29666]

Gene Synonyms

COXPD15, FMT, FMT1

Location

About this transcript

This transcript has 5 exons, is associated with 5804 variant alleles and maps to 171 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000220058.4	MTFMT-001	1739	389aa	ENSP00000220058.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45280	H3BTN9 Q96DP5	NM_139242.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000558460.1	MTFMT-003	1522	389aa	ENSP00000452646.1	Nonsense mediated decay	CCDS45280	H3BTN9 Q96DP5	-	-
ENST00000543678.1	MTFMT-002	1216	144aa	ENSP00000443754.1	Nonsense mediated decay		B7Z734 H3BTN9	-	-
ENST00000560717.1	MTFMT-005	1111	134aa	ENSP00000457257.1	Nonsense mediated decay		H3BTN9	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000561025.1	MTFMT-006	204	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000558614.1	MTFMT-004	852	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000559633.1	MTFMT-007	421	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 852 bps,

Version

ENST00000558614.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000418159 (version 1)