Transcript: ENST00000543678.1 MTFMT-002

Description

mitochondrial methionyl-tRNA formyltransferase [Source:HGNC Symbol;Acc:29666]

Gene Synonyms

COXPD15, FMT, FMT1

Location

About this transcript

This transcript has 4 exons, is annotated with 5 domains and features, is associated with 6068 variant alleles and maps to 138 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000220058.4	MTFMT-001	1739	389aa	ENSP00000220058.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45280	H3BTN9 Q96DP5	NM_139242.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000558460.1	MTFMT-003	1522	389aa	ENSP00000452646.1	Nonsense mediated decay	CCDS45280	H3BTN9 Q96DP5	-	-
ENST00000543678.1	MTFMT-002	1216	144aa	ENSP00000443754.1	Nonsense mediated decay		B7Z734 H3BTN9	-	-
ENST00000560717.1	MTFMT-005	1111	134aa	ENSP00000457257.1	Nonsense mediated decay		H3BTN9	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000561025.1	MTFMT-006	204	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000558614.1	MTFMT-004	852	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000559633.1	MTFMT-007	421	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 1,216 bps, Translation length: 144 residues

Version

ENST00000543678.1

Type

Nonsense mediated decay

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000418158 (version 1)