Transcript: ENST00000251020.4 SALL1-001

Description

spalt-like transcription factor 1 [Source:HGNC Symbol;Acc:10524]

Gene Synonyms

HSAL1, Hsal1, SAL1, Sal-1, TBS, ZNF794

Location

Chromosome 16: 51,169,886-51,185,186 reverse strand.

About this transcript

This transcript has 3 exons, is annotated with 57 domains and features, is associated with 8416 variant alleles and maps to 456 oligo probes.

Gene

This transcript is a product of gene ENSG00000103449.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000440970.1	SALL1-201	5253	1227aa	ENSP00000407914.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45483	H3BSM9 Q9NSC2	NM_001127892.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000251020.4	SALL1-001	5146	1324aa	ENSP00000251020.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10747	H3BSM9 Q9NSC2	NM_002968.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000570206.1	SALL1-003	3896	1154aa	ENSP00000456777.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BSM9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000566102.1	SALL1-002	565	34aa	ENSP00000455582.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BQ32	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000541611.1	SALL1-202	565	147aa	ENSP00000442827.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H733	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000562674.1	SALL1-005	407	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 5,146 bps, Translation length: 1,324 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9NSC2

CCDS

This transcript is a member of the Human CCDS set: CCDS10747

Version

ENST00000251020.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000256883 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000251020.4 SALL1-001

Summary