Transcript: ENST00000561933.1 SLC7A6OS-002

Description

solute carrier family 7, member 6 opposite strand [Source:HGNC Symbol;Acc:25807]

Gene Synonyms

FLJ13291

Location

About this transcript

This transcript has 4 exons, is associated with 5653 variant alleles and maps to 305 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000263997.6	SLC7A6OS-001	4189	309aa	ENSP00000263997.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10865	Q96CW6	NM_032178.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000561590.1	SLC7A6OS-003	706	119aa	ENSP00000461470.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		I3L4S1	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000568315.1	SLC7A6OS-004	428	39aa	ENSP00000462436.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000561933.1	SLC7A6OS-002	4180	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000568538.1	SLC7A6OS-005	868	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 4,180 bps,

Version

ENST00000561933.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000432012 (version 6)