Transcript: ENST00000568886.1 VAC14-002

Description

Vac14 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:25507]

Gene Synonyms

ArPIKfyve, FLJ10305, TAX1BP2, TRX

Location

Chromosome 16: 70,721,342-70,834,885 reverse strand.

About this transcript

This transcript has 13 exons, is annotated with 7 domains and features, is associated with 53506 variant alleles and maps to 477 oligo probes.

Gene

This transcript is a product of gene ENSG00000103043.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000261776.5	VAC14-001	3099	782aa	ENSP00000261776.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10896	B3KSM8 Q08AM6 Q9NTB8	NM_018052.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000536184.2	VAC14-005	2161	214aa	ENSP00000439284.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B3KSM8 Q9NTB8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000566416.1	VAC14-010	780	260aa	ENSP00000455731.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000567648.1	VAC14-012	702	17aa	ENSP00000463485.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000568548.1	VAC14-003	2945	40aa	ENSP00000454650.1	Nonsense mediated decay		H3BN23	-	-
ENST00000568886.1	VAC14-002	2151	201aa	ENSP00000457809.1	Nonsense mediated decay		H3BUU8	-	-
ENST00000571759.1	VAC14-013	3609	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000561879.1	VAC14-008	432	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000566655.1	VAC14-007	1391	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000564685.1	VAC14-006	892	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000563662.1	VAC14-009	545	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000564512.1	VAC14-011	515	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 13, Coding exons: 7, Transcript length: 2,151 bps, Translation length: 201 residues

Version

ENST00000568886.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000434932 (version 2)

Favourite species

All species

Recent locations

Transcript: ENST00000568886.1 VAC14-002

Summary